Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS44422.1Protocatechuate 4,5-dioxygenase subunit beta. (280 aa)    
Predicted Functional Partners:
KHS44423.1
Protocatechuate 4,5-dioxygenase subunit alpha.
 
 0.998
KHS44421.1
Oxidoreductase-like protein.
 
  
 0.976
KHS44424.1
Amidohydrolase.
 
  
 0.958
KHS44425.1
6-phosphogluconate dehydrogenase.
 
     0.948
KHS42636.1
Extradiol ring-cleavage dioxygenase LigAB, LigA subunit.
 
  
 0.930
KHS44428.1
Methylitaconate delta2-delta3-isomerase.
 
  
 0.929
ligK
4-hydroxy-4-methyl-2-oxoadipate aldolase.
 
   
 0.887
KHS44426.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.882
KHS45563.1
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.872
KHS42350.1
Amidohydrolase.
 
  
 0.808
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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