Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS44356.1Hypothetical protein. (672 aa)    
Predicted Functional Partners:
KHS43879.1
alpha-L-arabinofuranosidase.
 
   
 0.832
galA
Alpha-galactosidase.
 
     0.782
KHS44467.1
alpha-L-fucosidase.
  
     0.768
xynB_2
Putative beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.763
KHS44482.1
Endo-1,4-beta-xylanase.
 
   
 0.744
KHS43886.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
  
     0.744
KHS44469.1
Putative endo-1,5-alpha-L-arabinanase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.742
KHS44961.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.738
KHS46025.1
alpha-L-rhamnosidase.
  
     0.684
KHS44960.1
Putative xylanase.
  
     0.658
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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