Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KHS44072.1Calcium-binding EF-hand protein. (204 aa)    
Predicted Functional Partners:
KHS44071.1
Two component transcriptional regulator.
       0.816
KHS44070.1
Periplasmic sensor signal transduction histidine kinase.
       0.780
KHS45576.1
Cystathionine beta-lyase.
     
  0.643
KHS47685.1
Hypothetical protein.
  
     0.527
KHS44069.1
Peptidase M1, membrane alanine aminopeptidase.
       0.488
KHS45804.1
Acyltransferase.
  
     0.484
KHS44123.1
Hypothetical protein.
  
     0.482
KHS43371.1
Response regulator receiver domain-containing protein.
  
     0.474
KHS44073.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.454
KHS46104.1
Hypothetical protein.
  
     0.447
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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