Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS44108.1LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (265 aa)    
Predicted Functional Partners:
apaG
ApaG protein.
       0.826
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
     0.627
KHS44106.1
Recombinational DNA repair protein (RecF pathway)-like protein.
       0.562
KHS41600.1
Ribonuclease.
  
 
   0.539
KHS44109.1
Diguanylate cyclase/phosphodiesterase.
       0.538
KHS48474.1
TonB-like protein.
  
     0.537
KHS43441.1
Glutamate synthase (NADH) large subunit.
     
 0.518
KHS44380.1
Polysaccharide biosynthesis protein.
  
     0.511
KHS48109.1
Hypothetical protein.
  
     0.467
yjdF
Putative membrane protein YjdF.
       0.450
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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