STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44122.1UspA domain-containing protein. (259 aa)    
Predicted Functional Partners:
KHS44123.1
Hypothetical protein.
       0.614
KHS44121.1
Epoxide hydrolase domain-containing phosphatase.
       0.525
KHS45601.1
OmpW.
 
  
 0.524
KHS47755.1
TonB-dependent receptor.
  
     0.481
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.479
KHS49080.1
TPR repeat-containing protein.
 
  
 0.475
KHS47724.1
TPR repeat protein.
  
     0.474
KHS45603.1
Crp/FNR family transcriptional regulator.
 
  
 0.464
KHS43179.1
ABC transporter permease.
  
     0.451
KHS46954.1
TPR repeat-containing protein.
  
     0.403
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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