Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS44143.1TonB-dependent receptor. (776 aa)    
Predicted Functional Partners:
KHS43904.1
TonB-dependent receptor.
  
  
  0.741
KHS46543.1
TonB-dependent receptor.
  
     0.733
KHS43918.1
TonB-dependent receptor.
  
  
  0.722
KHS42577.1
TonB-dependent receptor.
  
  
  0.680
KHS44971.1
TonB-dependent receptor.
  
     0.654
KHS45257.1
TonB-dependent receptor.
  
  
  0.635
KHS44950.1
anti-FecI sigma factor FecR.
  
    0.629
KHS46502.1
TonB-dependent receptor.
  
  
  0.598
KHS48331.1
TonB-dependent siderophore receptor.
  
    0.543
KHS45255.1
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.534
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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