Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS43971.1CelD-like protein. (389 aa)    
Predicted Functional Partners:
KHS43970.1
Transcription factor jumonji, jmjC.
 
     0.962
KHS43969.1
palmitoyl-CoA hydrolase.
 
     0.755
KHS49220.1
CelD-like protein.
 
     0.658
KHS48046.1
Hypothetical protein.
  
     0.647
KHS48436.1
Flp pilus assembly protein TadG.
  
     0.633
KHS48143.1
TetR family transcriptional regulator.
  
     0.632
KHS48198.1
Flp pilus assembly protein TadG.
  
     0.628
hppA
Membrane-bound proton-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
       0.607
KHS43460.1
Hypothetical protein.
  
     0.543
KHS43983.1
Pilus assembly protein CpaD.
  
     0.537
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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