Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KHS43980.1Type II secretion system protein. (336 aa)    
Predicted Functional Partners:
KHS43981.1
Type II secretion system protein.
 
 
 0.999
KHS43985.1
Flp pilus assembly CpaB.
 
 
 0.997
KHS43982.1
Response regulator receiver domain-containing protein.
 
 
 0.996
KHS43984.1
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
 
 0.991
KHS48372.1
Type II secretion system protein E.
 
 
 0.979
KHS45916.1
Conjugal transfer protein TrbB.
 
 
 0.963
KHS48429.1
Component of type 4 pilus pilin subunit protein.
 
  
 0.877
KHS43983.1
Pilus assembly protein CpaD.
 
  
 0.864
KHS43986.1
Peptidase A24A, prepilin type IV.
 
     0.833
KHS48436.1
Flp pilus assembly protein TadG.
 
    0.798
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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