STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS43982.1Response regulator receiver domain-containing protein. (421 aa)    
Predicted Functional Partners:
KHS43985.1
Flp pilus assembly CpaB.
 
  
 0.995
KHS43981.1
Type II secretion system protein.
 
  
 0.994
KHS43980.1
Type II secretion system protein.
 
  
 0.988
KHS43984.1
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.987
KHS43986.1
Peptidase A24A, prepilin type IV.
 
  
 0.968
KHS48429.1
Component of type 4 pilus pilin subunit protein.
 
  
 0.957
KHS43983.1
Pilus assembly protein CpaD.
 
     0.949
KHS48197.1
TadE-like protein; Overlaps another CDS with the same product name.
 
    0.901
KHS48435.1
TadE-like protein.
 
    0.892
KHS45620.1
TadE-like protein; Overlaps another CDS with the same product name.
 
    0.889
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.