Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS43984.1Type II and III secretion system protein; Belongs to the bacterial secretin family. (552 aa)    
Predicted Functional Partners:
KHS43982.1
Response regulator receiver domain-containing protein.
 
 
 0.998
KHS43985.1
Flp pilus assembly CpaB.
 
 
 0.998
KHS43981.1
Type II secretion system protein.
 
 
 0.993
KHS43980.1
Type II secretion system protein.
 
 
 0.991
KHS48372.1
Type II secretion system protein E.
 
 0.976
KHS43986.1
Peptidase A24A, prepilin type IV.
 
  
 0.954
KHS45916.1
Conjugal transfer protein TrbB.
 
 
 0.941
KHS43983.1
Pilus assembly protein CpaD.
 
  
 0.899
KHS48429.1
Component of type 4 pilus pilin subunit protein.
 
  
 0.881
KHS49080.1
TPR repeat-containing protein.
  
 0.829
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.