STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS43984.1Type II and III secretion system protein; Belongs to the bacterial secretin family. (552 aa)    
Predicted Functional Partners:
KHS43985.1
Flp pilus assembly CpaB.
 
  
 0.995
KHS43982.1
Response regulator receiver domain-containing protein.
 
  
 0.987
KHS43980.1
Type II secretion system protein.
 
  
 0.968
KHS43981.1
Type II secretion system protein.
 
  
 0.968
KHS43986.1
Peptidase A24A, prepilin type IV.
 
  
 0.919
KHS48372.1
Type II secretion system protein E.
  
 0.914
KHS43983.1
Pilus assembly protein CpaD.
 
   
 0.880
KHS45916.1
Conjugal transfer protein TrbB.
  
 0.832
KHS48429.1
Component of type 4 pilus pilin subunit protein.
 
  
 0.815
KHS48197.1
TadE-like protein; Overlaps another CDS with the same product name.
 
  
 0.720
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.