Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KHS43990.1Xylose isomerase-like TIM barrel. (316 aa)    
Predicted Functional Partners:
KHS45989.1
Xylose isomerase-like TIM barrel domain-containing protein.
  
 
  0.872
iolE
Inosose dehydratase.
 
    
0.823
KHS45053.1
Hypothetical protein.
  
     0.762
KHS45052.1
Xylose isomerase-like TIM barrel domain-containing protein.
  
     0.761
KHS43992.1
Hypothetical protein.
  
     0.752
KHS45033.1
Alpha/beta hydrolase family protein.
  
     0.743
KHS44061.1
TetR family transcriptional regulator.
  
     0.695
KHS44369.1
Sterol desaturase.
  
     0.645
KHS45015.1
Arylmalonate decarboxylase.
  
     0.621
vgb
Virginiamycin B lyase.
  
     0.609
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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