Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pufBLight-harvesting protein B-870 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)    
Predicted Functional Partners:
KHS44027.1
Light-harvesting protein B-880 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 0.999
pufL
Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.
 
 0.998
pufM
Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
 
 
 0.997
pufC
Photosynthetic reaction center cytochrome c subunit precursor; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.
 
 
 0.992
puhA
Reaction center protein H chain.
  
 
 0.984
chlB
Light-independent protochlorophyllide reductase subunit B.
 
   
 0.927
bchN
Light-independent protochlorophyllide reductase subunit N.
 
    0.913
KHS44032.1
Hypothetical protein.
 
   
 0.876
crtC
Acyclic carotenoid 1,2-hydratase.
 
     0.832
KHS44016.1
2-vinyl bacteriochlorophyllide hydratase (BCHF).
  
   
 0.786
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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