STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44032.1Hypothetical protein. (321 aa)    
Predicted Functional Partners:
nifH1
Nitrogenase iron protein 1; Belongs to the NifH/BchL/ChlL family.
 
 
 0.992
chlB
Light-independent protochlorophyllide reductase subunit B.
 
 
 0.991
bchN
Light-independent protochlorophyllide reductase subunit N.
 
 
 0.991
KHS44016.1
2-vinyl bacteriochlorophyllide hydratase (BCHF).
  
 
 0.957
cyoE
Protoheme IX farnesyltransferase.
 
 
 0.955
KHS44033.1
hydroxyneurosporene-O-methyltransferase.
 
     0.901
bchD
Magnesium-chelatase 60 kDa subunit.
  
 
 0.867
pufB
Light-harvesting protein B-870 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
   
 0.860
KHS44027.1
Light-harvesting protein B-880 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
   
 0.859
crtC
Acyclic carotenoid 1,2-hydratase.
 
    0.850
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.