STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44034.1Amine oxidase. (519 aa)    
Predicted Functional Partners:
crtC
Acyclic carotenoid 1,2-hydratase.
 
 
 0.984
KHS44033.1
hydroxyneurosporene-O-methyltransferase.
 
 
 0.966
KHS48323.1
Farnesyl-diphosphate farnesyltransferase.
 
 
 0.939
KHS44032.1
Hypothetical protein.
 
  
 0.848
bchD
Magnesium-chelatase 60 kDa subunit.
 
 
 0.834
chlB
Light-independent protochlorophyllide reductase subunit B.
 
  
 0.831
bchN
Light-independent protochlorophyllide reductase subunit N.
 
    0.827
KHS44016.1
2-vinyl bacteriochlorophyllide hydratase (BCHF).
  
  
 0.793
cyoE
Protoheme IX farnesyltransferase.
 
 
 0.786
KHS44021.1
Putative oxidoreductase.
 
 
 0.785
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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