STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtCAcyclic carotenoid 1,2-hydratase. (256 aa)    
Predicted Functional Partners:
KHS44034.1
Amine oxidase.
 
 
 0.984
KHS44033.1
hydroxyneurosporene-O-methyltransferase.
 
  
 0.976
KHS48325.1
Amine oxidase.
 
 
 0.895
chlB
Light-independent protochlorophyllide reductase subunit B.
 
    0.871
bchN
Light-independent protochlorophyllide reductase subunit N.
 
  
 0.870
nifH1
Nitrogenase iron protein 1; Belongs to the NifH/BchL/ChlL family.
 
    0.863
KHS44021.1
Putative oxidoreductase.
  
 
 0.853
KHS44032.1
Hypothetical protein.
 
    0.850
chlN
Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
    0.847
KHS44027.1
Light-harvesting protein B-880 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
     0.842
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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