Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KHS43844.1FAD dependent oxidoreductase. (528 aa)    
Predicted Functional Partners:
KHS48323.1
Farnesyl-diphosphate farnesyltransferase.
 
 
 0.850
KHS43843.1
Hypothetical protein.
       0.784
KHS43845.1
3-oxoacyl-(acyl-carrier-protein) reductase.
    
  0.780
KHS43841.1
FAD-binding monooxygenase.
 
  
  0.747
KHS48440.1
Hypothetical protein.
  
 
 0.744
KHS43842.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.725
bchD
Magnesium-chelatase 60 kDa subunit.
 
 
 0.712
KHS43840.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.667
crtC
Acyclic carotenoid 1,2-hydratase.
  
 
 0.623
KHS48326.1
Lycopene cyclase.
  
 
 0.613
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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