Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHS43846.1LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (335 aa)    
Predicted Functional Partners:
KHS43848.1
TonB-dependent receptor-like protein.
 
     0.795
KHS43847.1
NAD-dependent epimerase/dehydratase.
 
     0.778
KHS43849.1
Putative oxidoreductase.
 
     0.774
KHS47020.1
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; Belongs to the UPF0255 family.
 
     0.715
KHS43838.1
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein.
  
     0.712
KHS44051.1
Major facilitator transporter.
  
     0.581
KHS47023.1
Major facilitator transporter.
  
     0.553
KHS47022.1
FAD-binding monooxygenase.
 
     0.549
KHS43841.1
FAD-binding monooxygenase.
 
     0.543
KHS43441.1
Glutamate synthase (NADH) large subunit.
     
 0.518
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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