STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS43856.1TonB-dependent receptor-like protein. (544 aa)    
Predicted Functional Partners:
KHS43855.1
TonB-dependent receptor-like protein.
     0.918
KHS44455.1
TonB-dependent receptor.
  
     0.774
KHS43904.1
TonB-dependent receptor.
  
 
  0.774
KHS43918.1
TonB-dependent receptor.
  
 
  0.768
KHS45886.1
TonB-dependent receptor.
 
     0.754
KHS42577.1
TonB-dependent receptor.
  
 
  0.747
KHS43219.1
TonB-dependent receptor.
  
  
  0.701
KHS44082.1
TonB-dependent receptor-like protein.
  
     0.696
KHS46543.1
TonB-dependent receptor.
  
  
  0.687
KHS45257.1
TonB-dependent receptor.
  
 
  0.680
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.