Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS43862.1methylmalonyl-CoA epimerase. (176 aa)    
Predicted Functional Partners:
KHS43864.1
SnoaL-like domain protein.
 
  
  0.880
KHS48829.1
methylmalonyl-CoA mutase.
    
 0.855
KHS43863.1
Rieske (2Fe-2S) domain-containing protein.
 
     0.784
KHS45860.1
Putative lumazine-binding protein.
  
  
  0.781
KHS43860.1
Alcohol dehydrogenase.
       0.773
KHS43861.1
Short-chain dehydrogenase/reductase SDR.
       0.773
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
    
 0.771
KHS44490.1
Xylose isomerase domain-containing protein.
  
  
  0.740
KHS43871.1
Trehalose utilization.
 
     0.736
KHS43892.1
Hypothetical protein.
  
     0.729
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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