Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KHS43872.1Short-chain dehydrogenase/reductase SDR. (254 aa)    
Predicted Functional Partners:
KHS43441.1
Glutamate synthase (NADH) large subunit.
     
 0.722
KHS48133.1
Short-chain dehydrogenase/reductase SDR.
  
     0.655
KHS43873.1
TonB-dependent receptor.
       0.523
KHS43875.1
Short-chain dehydrogenase/reductase SDR.
 
    
0.520
fabG_2
3-oxoacyl-ACP reductase.
  
     0.430
KHS43874.1
Alcohol dehydrogenase.
  
  0.422
KHS42657.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.415
KHS45627.1
Short-chain dehydrogenase/reductase SDR.
  
  
 
0.406
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
    
  0.400
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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