Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHS43876.1AraC family transcriptional regulator. (303 aa)    
Predicted Functional Partners:
KHS43441.1
Glutamate synthase (NADH) large subunit.
    
 0.738
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
  
  
  0.601
KHS43874.1
Alcohol dehydrogenase.
       0.576
KHS43875.1
Short-chain dehydrogenase/reductase SDR.
       0.576
KHS45796.1
Alpha/beta hydrolase.
  
     0.512
KHS47674.1
Malic enzyme.
     
 0.508
KHS48655.1
Periplasmic sensor signal transduction histidine kinase.
     
  0.450
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.436
ribB-2
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.436
KHS44067.1
Para-aminobenzoate synthase, component I.
     
  0.412
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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