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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS43879.1alpha-L-arabinofuranosidase. (528 aa)    
Predicted Functional Partners:
KHS44961.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.906
xynB_2
Putative beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.899
KHS44469.1
Putative endo-1,5-alpha-L-arabinanase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.891
KHS44970.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.877
xynB_1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.869
KHS49203.1
Glycoside hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.865
uxaC
Uronate isomerase.
  
  
 0.857
KHS44482.1
Endo-1,4-beta-xylanase.
 
  
 0.856
KHS44437.1
Twin-arginine translocation pathway signal; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.844
KHS44356.1
Hypothetical protein.
 
   
 0.820
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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