STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS43754.1Phage integrase; Overlaps another CDS with the same product name. (304 aa)    
Predicted Functional Partners:
KHS43753.1
Phage integrase; Overlaps another CDS with the same product name.
     0.948
KHS42594.1
Phage integrase; Overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
     0.782
KHS42035.1
Phage integrase; Overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
     0.782
KHS41560.1
Integrase family protein; Overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
 
     0.776
KHS41562.1
Phage integrase family protein; Overlaps another CDS with the same product name.
     0.769
KHS43752.1
Putative methylase/helicase.
       0.559
xerC-2
Phage integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.526
KHS42741.1
Phage integrase; Belongs to the 'phage' integrase family.
  
     0.493
xerC-3
Phage integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.487
KHS43757.1
Plasmid encoded RepA protein.
  
     0.467
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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