Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KHS42621.1LuxR family transcriptional regulator. (191 aa)    
Predicted Functional Partners:
KHS48773.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
   
 0.949
KHS46091.1
PAS/PAC sensor signal transduction histidine kinase.
   
 0.945
KHS48772.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
  
 0.895
KHS42633.1
LuxR family transcriptional regulator.
   
 0.805
KHS42515.1
Histidine kinase.
   
 0.805
KHS42734.1
Hypothetical protein.
   
 0.735
KHS42622.1
Signal transduction histidine kinase.
  
 0.731
KHS42692.1
Multi-sensor hybrid histidine kinase.
   
 0.705
KHS48655.1
Periplasmic sensor signal transduction histidine kinase.
   
 0.700
KHS46697.1
Histidine kinase.
   
 0.682
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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