STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS42621.1LuxR family transcriptional regulator. (191 aa)    
Predicted Functional Partners:
KHS46091.1
PAS/PAC sensor signal transduction histidine kinase.
   
 0.981
KHS48773.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
  
 0.977
KHS48772.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
  
 0.914
KHS42633.1
LuxR family transcriptional regulator.
   
 0.848
KHS42515.1
Histidine kinase.
   
 0.848
KHS42622.1
Signal transduction histidine kinase.
  
 0.775
KHS42734.1
Hypothetical protein.
   
 0.771
KHS42692.1
Multi-sensor hybrid histidine kinase.
   
 0.756
KHS48655.1
Periplasmic sensor signal transduction histidine kinase.
   
 0.743
KHS46697.1
Histidine kinase.
   
 0.726
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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