STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS42636.1Extradiol ring-cleavage dioxygenase LigAB, LigA subunit. (132 aa)    
Predicted Functional Partners:
KHS42637.1
Protocatechuate 4,5-dioxygenase subunit beta.
 
  
 0.987
KHS44423.1
Protocatechuate 4,5-dioxygenase subunit alpha.
 
 
0.983
KHS44422.1
Protocatechuate 4,5-dioxygenase subunit beta.
 
  
 0.945
KHS44421.1
Oxidoreductase-like protein.
 
  
 0.943
KHS44428.1
Methylitaconate delta2-delta3-isomerase.
 
  
 0.880
KHS45563.1
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.825
KHS48705.1
Glycine cleavage system protein T; Belongs to the GcvT family.
  
  
 0.817
KHS44424.1
Amidohydrolase.
 
  
 0.803
KHS42350.1
Amidohydrolase.
 
  
 0.777
KHS45553.1
Glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
  
  
 0.771
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.