STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS42589.1Genomic island protein. (298 aa)    
Predicted Functional Partners:
ybeY
Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.868
KHS42590.1
Methylase/helicase.
 
     0.839
KHS43722.1
Hypothetical protein.
 
     0.705
KHS41568.1
Hypothetical protein.
 
     0.704
KHS41724.1
Hypothetical protein.
 
     0.702
KHS49372.1
Hypothetical protein.
 
     0.698
KHS49594.1
Hypothetical protein.
 
     0.698
KHS42595.1
Putative methylase/helicase.
 
     0.661
KHS49339.1
Virulence-associated protein E.
 
  
 
0.645
KHS49303.1
Genomic island protein.
 
  
 
0.637
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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