Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS42325.1Hypothetical protein. (136 aa)    
Predicted Functional Partners:
KHS42323.1
Conjugative transfer pilus assembly protein TraH.
       0.773
KHS42324.1
Conjugal transfer pilus assembly protein TraF.
       0.773
KHS42326.1
Conjugal transfer mating pair stabilization protein TraN.
       0.773
KHS42327.1
Conjugal transfer pilus assembly protein TrbC.
       0.773
KHS42328.1
Conjugal transfer pilus assembly protein TraU.
       0.773
KHS42329.1
Hypothetical protein.
       0.773
KHS42330.1
Conjugal transfer pilus assembly protein TraW.
       0.773
KHS42331.1
Type IV secretory pathway protease TraF-like protein.
       0.773
KHS42332.1
Hypothetical protein.
       0.773
KHS42333.1
Hypothetical protein.
       0.773
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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