STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS42193.1TrwC protein. (1013 aa)    
Predicted Functional Partners:
KHS42192.1
Type IV secretory pathway VirD4 components-like protein.
 
     0.946
KHS48470.1
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 
 0.927
KHS45813.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.789
KHS42311.1
Type IV secretory pathway VirD4 components-like protein.
 
     0.774
KHS42191.1
Hypothetical protein.
       0.774
KHS49377.1
Type IV secretory pathway VirD4 components-like protein.
 
     0.773
KHS49599.1
Type IV secretory pathway VirD4 components-like protein.
 
     0.773
KHS41716.1
Type IV secretory pathway VirD4 components-like protein.
 
     0.759
KHS42050.1
Virulence-associated protein E.
 
     0.731
KHS49339.1
Virulence-associated protein E.
 
     0.696
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.