Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHS42203.1Conjugal transfer pilus assembly protein TraF. (274 aa)    
Predicted Functional Partners:
KHS42202.1
Conjugative transfer pilus assembly protein TraH.
 
     0.946
KHS42204.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.923
KHS42205.1
Conjugal transfer pilus assembly protein TrbC.
 
     0.923
KHS42206.1
Conjugal transfer pilus assembly protein TraU.
 
     0.923
KHS42207.1
Conjugal transfer pilus assembly protein TraW.
 
     0.923
KHS42211.1
ATPase.
 
     0.922
KHS42201.1
TraG-like protein.
 
     0.920
KHS42214.1
Conjugal transfer pilus assembly protein TraB.
 
     0.917
KHS42208.1
Type IV secretory pathway protease TraF-like protein.
 
     0.913
KHS42213.1
Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
   0.868
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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