Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS42035.1Phage integrase; Overlaps another CDS with the same product name; Belongs to the 'phage' integrase family. (515 aa)    
Predicted Functional Partners:
KHS42034.1
Phage integrase; Overlaps another CDS with the same product name.
 
     0.947
KHS42033.1
Phage integrase; Overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
 
    
0.840
KHS43754.1
Phage integrase; Overlaps another CDS with the same product name.
 
     0.779
KHS42593.1
Phage integrase; Overlaps another CDS with the same product name.
 
     0.779
KHS41561.1
Integrase/recombinase; Overlaps another CDS with the same product name.
 
     0.771
KHS41575.1
Phage integrase; Belongs to the 'phage' integrase family.
  
     0.631
KHS42032.1
Putative methylase/helicase.
       0.623
KHS43757.1
Plasmid encoded RepA protein.
  
     0.530
KHS45859.1
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.492
KHS42036.1
Putative methylase/helicase.
       0.480
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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