Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS42054.1VirC1 protein. (228 aa)    
Predicted Functional Partners:
KHS42053.1
Hypothetical protein.
       0.773
KHS46894.1
Bacteriophage N4 adsorption protein B.
  
 
 0.582
KHS45083.1
parB-like partition protein; Belongs to the ParB family.
 
 
 0.522
KHS42029.1
parB-like partition protein; Belongs to the ParB family.
  
   0.515
KHS49345.1
parB-like partition protein.
  
   0.514
KHS49567.1
parB-like partition protein.
  
   0.514
KHS49080.1
TPR repeat-containing protein.
  
 
 0.509
KHS49336.1
parB-like partition protein; Belongs to the ParB family.
  
 
 0.460
KHS49558.1
parB-like partition protein.
  
 
 0.460
KHS47806.1
Chromosome segregation DNA-binding protein; Belongs to the ParB family.
  
 
 0.460
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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