STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS42054.1VirC1 protein. (228 aa)    
Predicted Functional Partners:
KHS42053.1
Hypothetical protein.
       0.773
KHS45083.1
parB-like partition protein; Belongs to the ParB family.
 
 
 0.553
KHS42029.1
parB-like partition protein; Belongs to the ParB family.
  
   0.550
KHS49345.1
parB-like partition protein.
  
   0.549
KHS49567.1
parB-like partition protein.
  
   0.549
KHS49336.1
parB-like partition protein; Belongs to the ParB family.
  
 
 0.496
KHS49558.1
parB-like partition protein.
  
 
 0.496
KHS47806.1
Chromosome segregation DNA-binding protein; Belongs to the ParB family.
  
 
 0.496
KHS43759.1
parB-like partition protein; Belongs to the ParB family.
  
 
 0.496
KHS45899.1
ParB-like protein.
   
   0.491
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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