STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS42067.1Putative transposase. (89 aa)    
Predicted Functional Partners:
KHS45134.1
Putative transposase.
  
 
 0.945
KHS49429.1
Hypothetical protein.
  
     0.556
KHS49651.1
Hypothetical protein.
  
     0.556
KHS42736.1
Transposase.
 
    0.462
KHS49418.1
Heavy metal translocating P-type ATPase.
     
 0.454
KHS49640.1
Heavy metal translocating P-type ATPase.
     
 0.454
cysN
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
       0.422
KHS45098.1
Putative transposase for insertion sequence element.
 
     0.420
cusB
Copper efflux system membrane protein CusB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.416
repA_2
Regulatory protein RepA.
  
     0.413
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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