STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS42078.1Putative polysaccharide export protein. (242 aa)    
Predicted Functional Partners:
KHS42079.1
Non-specific protein-tyrosine kinase.
 
 0.999
KHS49006.1
Sugar transferase.
 
 
 0.988
KHS42077.1
O-antigen polymerase family protein.
 
  
 0.968
gelD
Periplasmic protein GelD involved in polysaccharide export.
  
  
  0.947
gumC
Putative protein involved in exopolysaccharide biosynthesis.
 
 0.939
KHS49216.1
Lipopolysaccharide biosynthesis protein.
 
 0.878
KHS49217.1
Polysaccharide export protein.
  
  
 
0.847
KHS49215.1
Exopolysaccharide biosynthesis protein.
 
 0.838
KHS42076.1
Sugar transferase.
 
 
 0.835
KHS48784.1
Capsule polysaccharide export system periplasmic protein KpsD.
  
  
 
0.803
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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