Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS42078.1Putative polysaccharide export protein. (242 aa)    
Predicted Functional Partners:
KHS42079.1
Non-specific protein-tyrosine kinase.
 
 0.998
KHS49006.1
Sugar transferase.
 
 
 0.984
gumC
Putative protein involved in exopolysaccharide biosynthesis.
 
 0.974
KHS42077.1
O-antigen polymerase family protein.
 
 
 0.967
KHS49216.1
Lipopolysaccharide biosynthesis protein.
 
 0.936
gelD
Periplasmic protein GelD involved in polysaccharide export.
  
  
  0.933
KHS44080.1
Mannose-1-phosphate guanylyltransferase.
  
 
 0.877
KHS42076.1
Sugar transferase.
 
 
 0.852
KHS49215.1
Exopolysaccharide biosynthesis protein.
 
 0.812
KHS49217.1
Polysaccharide export protein.
  
  
0.810
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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