Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS41728.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
KHS41730.1
Transposase IS116/IS110/IS902 family protein.
     0.923
KHS41729.1
Hypothetical protein.
     0.907
KHS45248.1
Transposase IS116/IS110/IS902 family protein.
 
     0.797
KHS46104.1
Hypothetical protein.
  
     0.625
KHS45860.1
Putative lumazine-binding protein.
  
     0.559
KHS43757.1
Plasmid encoded RepA protein.
  
     0.554
KHS49487.1
Hypothetical protein.
  
     0.538
KHS49519.1
Hypothetical protein.
  
     0.538
KHS43892.1
Hypothetical protein.
  
     0.532
KHS41727.1
Hypothetical protein.
  
    0.490
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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