STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS41748.1Pathogenesis-like protein. (175 aa)    
Predicted Functional Partners:
dmfA1
N,N-dimethylformamidase alpha subunit.
    
   0.774
KHS47674.1
Malic enzyme.
    
  0.690
KHS43460.1
Hypothetical protein.
  
    0.439
KHS41749.1
Putative transposase for insertion sequence element.
       0.428
KHS48714.1
Ankyrin.
  
 0.424
galA
Alpha-galactosidase.
  
     0.411
KHS41747.1
UDP-glucose 6-dehydrogenase.
       0.408
KHS44146.1
Tetratricopeptide domain-containing protein.
  
 
   0.404
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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