Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHS41754.1Methanolan biosynthesis EpsI. (230 aa)    
Predicted Functional Partners:
KHS41755.1
Transmembrane protein EpsH.
 
     0.960
gumC
Putative protein involved in exopolysaccharide biosynthesis.
 
     0.955
KHS41761.1
Hypothetical protein.
 
     0.877
KHS41756.1
Protein-tyrosine kinase.
 
     0.866
gelD
Periplasmic protein GelD involved in polysaccharide export.
 
     0.847
gelF
Gellan polysaccharide biosynthesis protein GelF.
       0.770
KHS41760.1
Colanic acid biosynthesis protein.
 
     0.553
KHS49209.1
ABC transporter.
 
     0.417
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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