STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gelDPeriplasmic protein GelD involved in polysaccharide export. (270 aa)    
Predicted Functional Partners:
KHS42079.1
Non-specific protein-tyrosine kinase.
 
 0.996
gumC
Putative protein involved in exopolysaccharide biosynthesis.
 
 0.990
KHS49006.1
Sugar transferase.
 
 
 0.985
KHS49217.1
Polysaccharide export protein.
  
  
 0.948
KHS42078.1
Putative polysaccharide export protein.
  
  
  0.947
KHS41756.1
Protein-tyrosine kinase.
 
 0.936
KHS41755.1
Transmembrane protein EpsH.
 
     0.927
gelF
Gellan polysaccharide biosynthesis protein GelF.
    
  0.897
KHS49216.1
Lipopolysaccharide biosynthesis protein.
 
 0.863
KHS41754.1
Methanolan biosynthesis EpsI.
 
     0.856
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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