Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gelFGellan polysaccharide biosynthesis protein GelF. (405 aa)    
Predicted Functional Partners:
gelD
Periplasmic protein GelD involved in polysaccharide export.
    
  0.889
gumC
Putative protein involved in exopolysaccharide biosynthesis.
    
  0.852
KHS41756.1
Protein-tyrosine kinase.
    
  0.833
KHS49006.1
Sugar transferase.
    
  0.830
KHS42079.1
Non-specific protein-tyrosine kinase.
    
 0.807
KHS41754.1
Methanolan biosynthesis EpsI.
       0.770
KHS41755.1
Transmembrane protein EpsH.
       0.770
KHS44360.1
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
  0.485
KHS48111.1
Serine O-acetyltransferase.
    
  0.475
KHS41760.1
Colanic acid biosynthesis protein.
       0.438
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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