Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS41761.1Hypothetical protein. (289 aa)    
Predicted Functional Partners:
KHS41754.1
Methanolan biosynthesis EpsI.
 
     0.877
KHS41755.1
Transmembrane protein EpsH.
 
 
   0.872
gumC
Putative protein involved in exopolysaccharide biosynthesis.
 
    0.847
KHS41760.1
Colanic acid biosynthesis protein.
 
     0.817
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.671
gelD
Periplasmic protein GelD involved in polysaccharide export.
 
     0.607
KHS49209.1
ABC transporter.
 
 
   0.566
murG_2
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
       0.530
KHS49221.1
Hypothetical protein.
  
  
 0.521
KHS45828.1
Hypothetical protein.
  
     0.508
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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