STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS41707.1Signal transduction histidine kinase. (289 aa)    
Predicted Functional Partners:
KHS43370.1
Two-component response regulator.
 
  
 0.793
KHS43286.1
Response regulator receiver domain-containing protein.
  
     0.772
KHS46091.1
PAS/PAC sensor signal transduction histidine kinase.
   
 0.687
KHS48773.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
    
 0.670
KHS42515.1
Histidine kinase.
 
  
 0.666
KHS42633.1
LuxR family transcriptional regulator.
   
 0.628
KHS48772.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
    
 0.578
KHS48993.1
uracil-DNA glycosylase.
  
     0.553
KHS43368.1
FecI-like sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.551
KHS49226.1
Response regulator receiver domain-containing protein.
  
     0.550
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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