STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP66769.1ABC-type amino acid transport substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family. (290 aa)    
Predicted Functional Partners:
SEP66718.1
Cytochrome c-550 PedF.
 
 
 0.966
SEP66797.1
Sulfur-oxidizing protein SoxY.
 
  
  0.966
SEP66835.1
Uncharacterized sulfatase.
 
     0.944
SEP66686.1
Alcohol dehydrogenase (cytochrome c).
 
  
 0.921
SEQ98019.1
Polar amino acid transport system permease protein.
 
 0.852
SEQ97992.1
Polar amino acid transport system ATP-binding protein.
 
 0.840
SEQ91085.1
Diguanylate cyclase, GGDEF domain.
    
 0.834
SEQ81995.1
Quinohemoprotein ethanol dehydrogenase.
 
  
 0.830
SEP68632.1
Chorismate mutase.
    
 0.823
SEP75254.1
Response regulator receiver domain-containing protein.
    
 0.801
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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