STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP78748.1General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (494 aa)    
Predicted Functional Partners:
SEP78779.1
General secretion pathway protein F.
 
 0.986
SEQ51237.1
Type IV pilus assembly protein PilC.
 
 0.967
SEQ65915.1
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.964
SEP78719.1
General secretion pathway protein D.
  
 0.957
SEQ65739.1
General secretion pathway protein G.
 
 0.950
SEP78679.1
Type II secretion system protein C (GspC).
 
  
 0.897
SEQ65802.1
General secretion pathway protein I.
 
 0.892
SER02584.1
Tfp pilus assembly protein PilN.
   
 
 0.890
SEQ51209.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.885
SEQ65405.1
Type IV pilus assembly protein PilZ.
    
 
 0.874
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.