STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP86292.1Outer membrane transport energization protein ExbD. (140 aa)    
Predicted Functional Partners:
SEP86258.1
Biopolymer transport protein ExbB.
 
 
 0.939
SEP86234.1
Outer membrane transport energization protein TonB (TC 2.C.1.1.1).
 
   0.897
SEQ02931.1
Biopolymer transport protein ExbB.
 
 
 0.894
SEQ01166.1
Outer membrane transport energization protein ExbB (TC 2.C.1.1.1).
 
 
 0.890
SEQ16993.1
Outer membrane transport energization protein ExbB (TC 2.C.1.1.1).
 
 
 0.889
tolQ
Biopolymer transport protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.883
SEQ02906.1
Outer membrane transport energization protein TonB (TC 2.C.1.1.1).
 
   0.849
SEP86344.1
Hypothetical protein.
 
   0.819
SEQ01130.1
Protein TonB.
 
 
 0.763
SEQ17025.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.741
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.