STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP87259.1Uncharacterized domain 1-containing protein. (130 aa)    
Predicted Functional Partners:
SEP87234.1
AMP-binding enzyme C-terminal domain-containing protein.
 
     0.664
SER15196.1
Glutathione S-transferase.
  
     0.653
SEQ90820.1
Glutathione S-transferase.
  
     0.617
SER00114.1
Ferredoxin-NADP reductase.
  
 
  0.606
SEP87211.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
    
  0.604
SEQ52086.1
Methane monooxygenase component C.
  
 
  0.584
SEQ85394.1
Hypothetical protein.
  
     0.560
SEQ90848.1
Glutathione S-transferase.
  
     0.559
SER07146.1
Cytochrome P450.
  
     0.488
SEP87177.1
Alkane 1-monooxygenase.
       0.473
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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