Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP90075.1 | SEQ03407.1 | SAMN04488038_102148 | SAMN04488038_103142 | Exodeoxyribonuclease-3. | DNA-3-methyladenine glycosylase II. | 0.874 |
SEP90075.1 | SEQ29612.1 | SAMN04488038_102148 | SAMN04488038_105167 | Exodeoxyribonuclease-3. | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. | 0.518 |
SEP90075.1 | nth | SAMN04488038_102148 | SAMN04488038_113124 | Exodeoxyribonuclease-3. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.924 |
SEP90075.1 | polA | SAMN04488038_102148 | SAMN04488038_10572 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.923 |
SEQ03379.1 | SEQ03407.1 | SAMN04488038_103141 | SAMN04488038_103142 | Hypothetical protein. | DNA-3-methyladenine glycosylase II. | 0.562 |
SEQ03407.1 | SEP90075.1 | SAMN04488038_103142 | SAMN04488038_102148 | DNA-3-methyladenine glycosylase II. | Exodeoxyribonuclease-3. | 0.874 |
SEQ03407.1 | SEQ03379.1 | SAMN04488038_103142 | SAMN04488038_103141 | DNA-3-methyladenine glycosylase II. | Hypothetical protein. | 0.562 |
SEQ03407.1 | SEQ29612.1 | SAMN04488038_103142 | SAMN04488038_105167 | DNA-3-methyladenine glycosylase II. | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. | 0.966 |
SEQ03407.1 | SEQ30436.1 | SAMN04488038_103142 | SAMN04488038_105193 | DNA-3-methyladenine glycosylase II. | Protein ImuB. | 0.475 |
SEQ03407.1 | SEQ50697.1 | SAMN04488038_103142 | SAMN04488038_107113 | DNA-3-methyladenine glycosylase II. | Exodeoxyribonuclease-3. | 0.874 |
SEQ03407.1 | SEQ98875.1 | SAMN04488038_103142 | SAMN04488038_113126 | DNA-3-methyladenine glycosylase II. | Alkylated DNA repair dioxygenase AlkB. | 0.428 |
SEQ03407.1 | dinB | SAMN04488038_103142 | SAMN04488038_11348 | DNA-3-methyladenine glycosylase II. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.487 |
SEQ03407.1 | nth | SAMN04488038_103142 | SAMN04488038_113124 | DNA-3-methyladenine glycosylase II. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.510 |
SEQ03407.1 | polA | SAMN04488038_103142 | SAMN04488038_10572 | DNA-3-methyladenine glycosylase II. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.631 |
SEQ03407.1 | recA | SAMN04488038_103142 | SAMN04488038_12040 | DNA-3-methyladenine glycosylase II. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.534 |
SEQ29612.1 | SEP90075.1 | SAMN04488038_105167 | SAMN04488038_102148 | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. | Exodeoxyribonuclease-3. | 0.518 |
SEQ29612.1 | SEQ03407.1 | SAMN04488038_105167 | SAMN04488038_103142 | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. | DNA-3-methyladenine glycosylase II. | 0.966 |
SEQ29612.1 | SEQ30436.1 | SAMN04488038_105167 | SAMN04488038_105193 | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. | Protein ImuB. | 0.534 |
SEQ29612.1 | SEQ50697.1 | SAMN04488038_105167 | SAMN04488038_107113 | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. | Exodeoxyribonuclease-3. | 0.518 |
SEQ29612.1 | SEQ98875.1 | SAMN04488038_105167 | SAMN04488038_113126 | Methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. | Alkylated DNA repair dioxygenase AlkB. | 0.577 |
page 1 of 3