STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ06673.1AraC-type DNA-binding protein. (357 aa)    
Predicted Functional Partners:
SEP63570.1
Transcriptional regulator, AraC family.
  
     0.775
SEQ84728.1
AraC-type DNA-binding protein.
  
     0.775
SER15168.1
Transcriptional regulator, AraC family.
  
     0.774
SEQ39265.1
AraC-type DNA-binding protein.
  
     0.773
SER02900.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.703
SER11660.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.612
SEQ06719.1
Uncharacterized membrane protein SirB2.
       0.538
SEQ06749.1
Hypothetical protein.
       0.509
SEQ44148.1
AraC-type DNA-binding protein.
  
     0.448
SEQ48229.1
AraC family transcriptional regulator.
  
     0.422
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.