STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP98926.1Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (236 aa)    
Predicted Functional Partners:
SEQ05434.1
Acyl transferase domain-containing protein.
   
 0.816
SEQ56694.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
   
 0.816
SEQ95763.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
   
 0.816
SEP85550.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.785
SER04841.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.769
SER02900.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.722
SEP87097.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.695
SEP75322.1
Enoyl-(Acyl carrier protein) reductase.
  
 
  0.647
SEQ53366.1
Urea carboxylase precursor.
     
 0.615
SER21239.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
    
 0.567
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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