STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ43061.1Outer membrane receptor proteins, mostly Fe transport. (845 aa)    
Predicted Functional Partners:
SEQ41716.1
Iron complex outermembrane recepter protein.
  
 
 0.778
SEQ01058.1
Catecholate siderophore receptor.
  
  
 0.719
SEQ58967.1
Iron complex outermembrane recepter protein.
  
 
 0.689
SEP90129.1
Iron complex outermembrane recepter protein.
  
  
  0.680
SEQ41751.1
FecR family protein.
 
  
 0.678
SEP67763.1
FecR family protein.
 
  
 0.657
SEQ02906.1
Outer membrane transport energization protein TonB (TC 2.C.1.1.1).
  
   0.609
SEP86234.1
Outer membrane transport energization protein TonB (TC 2.C.1.1.1).
  
   0.582
SEP67485.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.578
SEQ17025.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.547
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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