STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ40559.1Hypothetical protein. (86 aa)    
Predicted Functional Partners:
SEQ40594.1
Hypothetical protein.
       0.773
SEQ40624.1
Mu-like prophage protein gpG.
       0.510
SEQ40350.1
Type IV fimbrial biogenesis protein FimT.
       0.454
SEQ40383.1
Hypothetical protein.
       0.454
SEQ40417.1
Tfp pilus assembly protein PilW.
       0.454
SEQ40451.1
Tfp pilus assembly protein PilX.
       0.454
SEQ40483.1
Neisseria PilC beta-propeller domain.
       0.454
SEQ40524.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.454
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.