STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ48229.1AraC family transcriptional regulator. (290 aa)    
Predicted Functional Partners:
SEQ96462.1
N-terminal half of MaoC dehydratase.
  
     0.725
SER02900.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.703
SEQ43468.1
Acyl dehydratase.
  
     0.688
SER23029.1
Acyl-CoA dehydrogenase.
  
     0.678
SEQ96113.1
Acyl dehydratase.
  
     0.660
SEQ48193.1
Sulfotransferase family protein.
 
     0.657
SEQ48337.1
Alkyl sulfatase dimerisation.
 
     0.652
SEQ07371.1
AraC-type DNA-binding protein.
  
     0.649
SEQ48296.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
     0.642
SEQ43030.1
Transcriptional regulator, TetR family.
  
     0.622
Your Current Organism:
Solimonas aquatica
NCBI taxonomy Id: 489703
Other names: BCRC 17835, DSM 25927, LMG 24500, LMG:24500, S. aquatica, Solimonas aquatica Sheu et al. 2011, Solimonas sp. NAA16, strain NAA16
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